Download 3D QSAR in Drug Design: Ligand-Protein Interactions and by Hugo Kubinyi, Gerd Folkers, Yvonne C. Martin PDF

By Hugo Kubinyi, Gerd Folkers, Yvonne C. Martin

ISBN-10: 0306468573

ISBN-13: 9780306468575

ISBN-10: 0792347900

ISBN-13: 9780792347903

Major development has been made within the research of three-d quantitative structure-activity relationships (3D QSAR) because the first ebook by way of Richard Cramer in 1988 and the 1st quantity within the sequence. 3D QSAR in Drug layout. conception, equipment and purposes, released in 1993. the purpose of that early publication used to be to give a contribution to the certainty and the extra program of CoMFA and comparable ways and to facilitate the correct use of those equipment. because then, hundreds of thousands of papers have seemed utilizing the fast constructing strategies of either 3D QSAR and computational sciences to check a large number of organic difficulties. back the editor(s) felt that the time had come to solicit stories on released and new viewpoints to record the state-of-the-art of 3D QSAR in its broadest definition and to supply visions of the place new ideas will emerge or new appli- tions might be stumbled on. The goal isn't just to spotlight new principles but in addition to teach the shortcomings, inaccuracies, and abuses of the equipment. we are hoping this publication will allow others to split trivial from visionary techniques and me-too method from in- vative suggestions. those issues guided our number of individuals. To our satisfaction, our demand papers elicited a good many manuscripts.

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Additional info for 3D QSAR in Drug Design: Ligand-Protein Interactions and Molecular Similarity, Vol. 2

Example text

The change in conformational cnthalpy. is approximated here by the amount of energy required for the ligand to adopt the receptor-bound conformation, defined by: (19) L L where Ebind. site is the energy of the ligand’s receptor-bound conformation, and E sol is the energy of the ligand in solvent at its nearest local minimum. calculated by comparing the energy of the receptor-bound conformation of the ligand to the nearest local minimum of the unbound ligand using the GB/SA [ 70] solvation model with the Amber all-atom force-field implementation in MacroModel.

Palomer. , Gago. F. C.. Reliability of comparative molecular field analysis models: Effects of data scaling and variable selection using a set of human synovial phospholipase A2 inhibitors, J. Med. Chem. (1997) 40. 1136-1148. Honig, B. , Classical electrostatics in biology and chemistry Science, 268 (1995) 1144–1149. , PLS–partial least squares projections to latent structures. In 3D-QSAR in drug dcsign: Theory. methods and applications. Kubinyi, H. ). ESCOM. Leiden. 1993. pp. 523-550. , Constantino.

Dearing, A.. A.. C.. J.. M. , molecular mechanics simulation of protein-ligand interactions: Binding of thyroid hormone analogues to prealbumin, J. AM. Chem. , 104 (1982) 6424–6434. , Gago. F. and Richards. G.. The binding of benzene sulfonamides to carbonic anhydrase enzyme: A molecular mechanics study and quantitative structure-activity relationship, J. Med. Chem.. 32 (1989) 951– 956. Holloway. , Chen. J.. , Ghosh. , Lyle. , Sanders. , 33 Rebecca C. Wade, An gel R. Ortiz and Federico Gago 15.

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3D QSAR in Drug Design: Ligand-Protein Interactions and Molecular Similarity, Vol. 2 by Hugo Kubinyi, Gerd Folkers, Yvonne C. Martin

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